The 1998–99 Japan Figure Skating Championships were the 67th edition of the event. They were held on January 15–17, 1999 in Yokohama. National Champions were crowned in the disciplines of men's singles, ladies' singles, and ice dancing. As well as crowning the national champions of Japan for the 1998–99 season, the results of this competition were used to help pick the teams for the 1999 World Championships and the 1999 Four Continents Championships.

This article includes a list of references, related reading, or external links, but its sources remain unclear because it lacks inline citations. (May 2010)

• 1998–99 Japan Figure Skating Championships results