Dcu_family

Dcu family

The C4-dicarboxylate uptake family or Dcu family (TC# 2.A.13) is a family of transmembrane ion transporters found in bacteria. Their function is to exchange dicarboxylates such as aspartate, malate, fumarate and succinate.

Quick Facts Anaerobic c4-dicarboxylate membrane transporter, Identifiers ...

Structure

Many members of this family are predicted to have 11 or 12 transmembrane regions (TMSs); however, one member of this family (Uncharacterized protein of Encarsia pergandiella symbiont, Cardinium hertigii, strain cEper1; TC# 2.A.13.2.1) is reported to have 10 transmembrane regions, with both the N- and C-termini localized to the periplasm.[1] For DcuA, the 'positive inside' rule is obeyed, and two putative TMSs are localized to a cytoplasmic loop between TMSs 5 and 6 and in the C-terminal periplasmic region.[2] The fully sequenced proteins are of fairly uniform size, from 434-446 amino acyl residues in length.

There are no crystal structures available for members of the Dcu family.

Function

The two E. coli proteins, DcuA (TC# 2.A.13.1.1) and DcuB (TC# 2.A.13.1.2), of the Dcu family are involved in the transport of aspartate, malate, fumarate and succinate, functioning as antiporters with any two of these substrates.[3][4][5] They exhibit 36% identity with 63% similarity, and both transport fumarate in exchange for succinate with the same affinity (30 μM). Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyse aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.[6] The two transporters can apparently substitute for each other under certain physiological conditions.[7]

The generalized transport reaction catalyzed by the proteins of the Dcu family is:

Dicarboxylate1 (out) + Dicarboxylate2 (in) ⇌ Dicarboxylate1 (in) + Dicarboxylate2 (out).

Expression

The Escherichia coli DcuA and DcuB proteins have very different expression patterns.[8] DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.[8][9][10][11]

See also


References

  1. Zientz E, Six S, Unden G (December 1996). "Identification of a third secondary carrier (DcuC) for anaerobic C4-dicarboxylate transport in Escherichia coli: roles of the three Dcu carriers in uptake and exchange". J. Bacteriol. 178 (24): 7241–7. doi:10.1128/jb.178.24.7241-7247.1996. PMC 178639. PMID 8955408.
  2. Golby P, Kelly DJ, Guest JR, Andrews SC (September 1998). "Topological analysis of DcuA, an anaerobic C4-dicarboxylate transporter of Escherichia coli". J. Bacteriol. 180 (18): 4821–7. doi:10.1128/JB.180.18.4821-4827.1998. PMC 107505. PMID 9733683.
  3. Six S, Andrews SC, Roberts RE, Unden G, Guest JR (November 1993). "Construction and properties of Escherichia coli mutants defective in two genes encoding homologous membrane proteins with putative roles in anaerobic C4-dicarboxylic acid transport". Biochem. Soc. Trans. 21 (4): 342S. doi:10.1042/bst021342s. PMID 8131924.
  4. Nogrady N, Imre A, Rychlik I, Barrow PA, Nagy B (December 2003). "Genes responsible for anaerobic fumarate and arginine metabolism are involved in growth suppression in Salmonella enterica serovar Typhimurium in vitro, without influencing colonisation inhibition in the chicken in vivo". Vet. Microbiol. 97 (3–4): 191–9. doi:10.1016/j.vetmic.2003.08.011. PMID 14654290.
  5. Ullmann R, Gross R, Simon J, Unden G, Kroger A (October 2000). "Transport of C(4)-dicarboxylates in Wolinella succinogenes". J. Bacteriol. 182 (20): 5757–64. doi:10.1128/jb.182.20.5757-5764.2000. PMC 94697. PMID 11004174.

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