The 1999 BYU Cougars football team represented Brigham Young University in the 1999 NCAA Division I-A football season. The Cougars were led by 28th-year head coach LaVell Edwards, in what would be his second-to-last season with the team, and played their home games at Cougar Stadium. This was the school's first year in the newly formed Mountain West Conference, and they would go on to share the conference's first conference championship with Utah and Colorado State. They finished with a record of 8–4 (5–2 MW), and were invited to the 1999 Motor City Bowl, where they lost to undefeated Marshall, 3–21.

More information Date, Time ...

Date	Time	Opponent	Rank	Site	TV	Result
September 9	6:00pm	Washington*		Cougar Stadium Provo, Utah	ESPN	W 35–28
September 16	6:00pm	No. 23 Colorado State	No. 25	Cougar Stadium Provo, Utah	ESPN	W 34–13
September 25	7:00pm	Virginia*	No. 17	Cougar Stadium Provo, Utah	ESPN2	L 40–45
October 1	7:00pm	at Utah State*		Romney Stadium Logan, Utah (The Old Wagon Wheel; Beehive Boot)	SWP[1]	W 34–31 OT
October 9	5:00pm	California*	No. 24	Cougar Stadium Provo, Utah	ABC	W 38–28
October 16	6:00pm	at New Mexico	No. 21	University Stadium Albuquerque, New Mexico		W 31–7
October 23	5:00pm	at UNLV	No. 19	Sam Boyd Stadium Whitney, Nevada	SWP	W 29–0
October 30	1:00pm	Air Force	No. 16	Cougar Stadium Provo, Utah	ESPN+	W 27–20
November 6	1:00pm	at San Diego State	No. 15	Qualcomm Stadium San Diego	SWP	W 30–7
November 13	Noon	at Wyoming	No. 15	War Memorial Stadium Laramie, Wyoming	SWP	L 17–31
November 20	1:00pm	Utah	No. 19	Cougar Stadium Provo, Utah (Holy War; Beehive Boot)	ESPN+	L 17–20
December 27		vs. No. 11 Marshall*		Pontiac Silverdome Pontiac, Michigan (Motor City Bowl)	ESPN	L 3–21
*Non-conference game Homecoming Rankings from AP Poll released prior to the game All times are in Mountain time

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•SportsWest Productions (SWP) games were shown locally on KSL 5.