The 1999 East Carolina Pirates football team was an American football team that represented East Carolina University as a member of Conference USA during the 1999 NCAA Division I-A football season. In their eighth season under head coach Steve Logan, the team compiled a 9–3 record.^[1] The Pirates offense scored 333 points while the defense allowed 225 points.

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Date	Time	Opponent	Rank	Site	TV	Result	Attendance	Source
September 4	3:00 pm	vs. West Virginia*		Ericsson Stadium Charlotte, NC	ESPN2	W 30–23	47,860	[2]
September 11	3:30 pm	Duke*		Dowdy–Ficklen Stadium Greenville, NC	FSN	W 27–9	42,052	[3]
September 18	7:00 pm	at South Carolina*		Williams–Brice Stadium Columbia, SC	TWC30	W 21–3	82,605	[4]
September 25	6:00 pm	No. 9 Miami (FL)*		Carter–Finley Stadium Raleigh, NC[a]	ESPN2	W 27–23	45,900	[5]
October 2	12:00 pm	at Army	No. 19	Michie Stadium West Point, NY	FSN	W 33–14	36,769	[6]
October 9	3:30 pm	Southern Miss	No. 16	Dowdy–Ficklen Stadium Greenville, NC	FSN	L 22–39	39,418	[7]
October 23	4:00 pm	Tulane	No. 20	Dowdy–Ficklen Stadium Greenville, NC	FSS	W 52–7	35,021	[8]
October 30	3:30 pm	at Houston	No. 17	Robertson Stadium Houston, TX	FSN	W 19–3	14,221	[9]
November 6	2:00 pm	at UAB	No. 18	Legion Field Birmingham, AL		L 17–36	18,062	[10]
November 13	3:30 pm	Cincinnati	No. 24	Dowdy–Ficklen Stadium Greenville, NC	FSN	W 48–34	33,912	[11]
November 20	12:00 pm	NC State*	No. 23	Dowdy–Ficklen Stadium Greenville, NC (rivalry)	TWC30	W 23–6	50,092	[12]
December 22	7:30 pm	vs. TCU*	No. 20	Ladd–Peebles Stadium Mobile, AL (Mobile Alabama Bowl)	ESPN2	L 14–28	34,200	[13]
*Non-conference game Homecoming Rankings from AP Poll released prior to the game All times are in Eastern time

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^{^[a]} The game was moved from Greenville to Raleigh due to Hurricane Floyd.