Halomonadaceae

Halomonadaceae

Halomonadaceae

Family of bacteria


Halomonadaceae is a family of halophilic Pseudomonadota.

Quick Facts Scientific classification, Genera ...

History

The family was originally described in 1988 to contain the genera Halomonas and Deleya.[3]

In 1989, Chromobacterium marismortui was reclassified as Chromohalobacter marismortui forming a third genus in the family Halomonadaceae.[4]

Subsequently, in 1990 a species was discovered and was originally proposed to be called Volcaniella eurihalina forming a new genus in the Halomonadaceae,[5] but was later (in 1995) reclassified as a member of the genus Halomonas.[6]

The species Carnimonas nigrificans (sole member of genus) was not placed in the family due to the lack of two out of 15 descriptive 16S rRNA signature sequences,[7] but it has been proposed to reclassify it into the family.[8]

In 1996, the family was later reorganised by unifying genera Deleya, Halomonas and Halovibrio and the species Paracoccus halodenitrificans into Halomonas and placing Zymobacter in this family.[9] However, it was later discovered that the strain of Halovibrio variabilis DSM 3051 and DSM 3050 differed and the latter was made type strain of the Halovibrio, which remains still in use.[10][11] and now comprising two species (the other being Halovibrio denitrificans)[11]

In 2002, Halomonas marina was transferred to its own genus Cobetia,[12] and in 2009 Halomonas marisflavi, Halomonas indalinina. and Halomonas avicenniae were transferred to a new genus called Kushneria (5 species)

Several singleton genera were created recently: in 2007, Halotalea alkalilenta was described,[13] Aidingimonas halophila in 2009,[14] Halospina denitrificans in 2006,[11] Modicisalibacter tunisiensis in 2009[15] Salinicola socius in 2009.[16] To the latter genus two species were transferred Halomonas salaria as Salinicola salarius and Chromohalobacter salarius as Salinicola halophilus.[17]

The family also contain the recently discovered but uncultured bacterium "Candidatus Portiera aleyrodidarum" (primary endosymbionts of whiteflies[18]).

Genera

  • Halomonas, the type genus
    • Halomonas elongata, the type species of the genus,[19] however the longest known members of the family are Halomonas halodentrificans (1952),[20] Chromohalobacter marismortui (1940)[21] and Chromohalobacter beijerinckii (originally Pseudomonas beijerinckii).[22]
    • Halomonas titanicae
  • Aidingimonas halophila [23]
  • Cobetia
  • Carnimonas
  • Chromohalobacter
    • Chromohalobacter marismortui
    • Chromohalobacter beijerinckii
    • Chromohalobacter canadensis and Chromohalobacter israelensis, formerly of the genus Halomonas
    • Chromohalobacter japonicus
    • Chromohalobacter nigrandesensis
    • Chromohalobacter salarius
    • Chromohalobacter salexigens
    • Chromohalobacter sarecensis, phychrotolerant
  • Halotalea alkalilenta[26]
  • Kushneria
    • Kushneria aurantia, type species
    • Kushneria marisflavi, Kushneria indalinina and Kushneria avicenniae were previously classified under Halomonas[27]
  • Modicisalibacter
  • Portiera
  • Zymobacter, not to be confused with Zymomonas mobilis, an alphaproteobacterion studies for its biofuel production, an easy error that even the International Code of Nomenclature of Bacteria made in [28] as noted in [29]

Note: Species of Deleya and Halovibrio are now Halomonas

Etymology

The names derives from Halomonas, which is the type genus of the family, plus the suffix -aceae, ending to denote a family[30]

Research

Geomicrobiologist Felisa Wolfe-Simon with a NASA funded team is researching a particular strain the family Halomonadaceae, named GFAJ-1, isolated and cultured from sediments collected along the shore of Mono Lake, near Yosemite National Park in eastern California.[31][32] This GFAJ-1 strain of Halomonadaceae can grow in the presence of high concentrations of arsenic.[33]

See also


References

  1. "Salicola". www.uniprot.org.
  2. "List of genera included in families: Halomonadaceae". List of Prokaryotic Names with Standing in Nomenclature. Retrieved 25 June 2016.
  3. Franzmann, P.D.; Wehmeyer, U.; Stackebrandt, E. (1988). "Halomonadaceae fam. nov., a new family of the class Proteobacteria to accommodate the genera Halomonas and Deleya". Syst. Appl. Microbiol. 11: 16–19. doi:10.1016/s0723-2020(88)80043-2.
  4. Ventosa, A.; Gutierrez, M.C.; Garcia, M.T.; Ruiz-Berraquero, F. (1989). "Classification of "Chromobacterium marismortui" in a new genus, Chromohalobacter gen. nov., as Chromohalobacter marismortui comb. nov., nom. rev". Int. J. Syst. Bacteriol. 39 (4): 382–386. doi:10.1099/00207713-39-4-382.
  5. QUESADA (E.), VALDERRAMA (M.J.), BEJAR (V.), VENTOSA (A.), GUTIERREZ (M.C.), RUIZ-BERRAQUERO (F.) and RAMOS-CORMENZANA (A.): Volcaniella eurihalina gen. nov., sp. nov., a moderately halophilic nonmotile gram-negative rod. Int. J. Syst. Bacteriol., 1990, 40, 261-267
  6. Garriga, M.; Ehrmann, M. A.; Arnau, J.; Hugas, M.; Vogel, R. F. (1998). "Carnimonas nigrificans gen. nov., sp. nov., a bacterial causative agent for black spot formation on cured meat products". International Journal of Systematic Bacteriology. 48 (3): 677–86. doi:10.1099/00207713-48-3-677. PMID 9734022.
  7. D. R. Arahal, W. Ludwig, K. H. Schleifer and A. Ventosa Phylogeny of the family Halomonadaceae based on 23S and 16S rDNA sequence analyses. International Journal of Systematic and Evolutionary Microbiology, Vol 52, 241-249
  8. ARAHAL (D.R.), CASTILLO (A.M.), LUDWIG (W.), SCHLEIFER (K.H.) and VENTOSA (A.): Proposal of Cobetia marina gen. nov., comb. nov., within the family Halomonadaceae, to include the species Halomonas marina. Syst. Appl. Microbiol., 2002, 25, 207-211.
  9. Wang, Y.; Tang, S. -K.; Lou, K.; Lee, J. -C.; Jeon, C. O.; Xu, L. -H.; Kim, C. -J.; Li, W. -J. (2009). "Aidingimonas halophila gen. Nov., sp. Nov., a moderately halophilic bacterium isolated from a salt lake". International Journal of Systematic and Evolutionary Microbiology. 59 (12): 3088–3094. doi:10.1099/ijs.0.010264-0. PMID 19643876.
  10. Anan'ina, L.N.; Plotnikova, E.G.; Gavrish, E.Y.; Demakov, V.A.; Evtushenko, L.I. (2007). "Salinicola socius gen. nov., sp. nov., a moderately halophilic bacterium from a naphthalene-utilizing microbial association". Microbiology. 76 (3): 324–330. doi:10.1134/s0026261707030095. S2CID 21296220. (translation of Mikrobiologiya, 2007, 76, 369-376)
  11. De La Haba, R. R.; Sanchez-Porro, C.; Marquez, M. C.; Ventosa, A. (2009). "Taxonomic study of the genus Salinicola: Transfer of Halomonas salaria and Chromohalobacter salarius to the genus Salinicola as Salinicola salarius comb. Nov. And Salinicola halophilus nom. Nov., respectively". International Journal of Systematic and Evolutionary Microbiology. 60 (4): 963–971. doi:10.1099/ijs.0.014480-0. PMID 19661506. S2CID 28728802.
  12. Thao, M. L.; Baumann, P. (2004). "Evolutionary Relationships of Primary Prokaryotic Endosymbionts of Whiteflies and Their Hosts". Applied and Environmental Microbiology. 70 (6): 3401–3406. doi:10.1128/AEM.70.6.3401-3406.2004. PMC 427722. PMID 15184137.
  13. Vreeland, R.H.; Litchfield, C.D.; Martin, E.L.; Elliot, E. (1980). "Halomonas elongata, a new genus and species of extremely salt-tolerant bacteria". Int. J. Syst. Bacteriol. 30 (2): 485–495. doi:10.1099/00207713-30-2-485.
  14. Robinson, J.; Gibbons, N.E. (1952). "The effect of salts on the growth of Micrococcus halodentrificans n. sp". Canadian Journal of Botany. 30 (2): 147–154. doi:10.1139/b52-013.
  15. Elazari-Volcani 1940
  16. Hof 1935
  17. Wang, Y.; Tang, S.K.; LOU, K.; LEE, J.C.; Jeon, C.O.; XU, L.H.; KIM, C.J.; LI, W.J. (2009). "Aidingimonas halophila gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt lake". Int. J. Syst. Evol. Microbiol. 59 (12): 3088–3094. doi:10.1099/ijs.0.010264-0. PMID 19643876.
  18. Cobet, A.B.; Wirsen, C.; Jones, G.E. (1970). "The effect of nickel on a marine bacterium, Arthrobacter marinus sp. nov". Journal of General Microbiology. 62 (2): 159–169. doi:10.1099/00221287-62-2-159. PMID 5493594.
  19. NTOUGIAS (S.), ZERVAKIS (G.I.) and FASSEAS (C.): Halotalea alkalilenta gen. nov., sp. nov., a novel osmotolerant and alkalitolerant bacterium from alkaline olive mill wastes, and emended description of the family Halomonadaceae Franzmann et al. 1989
  20. Arahal, D. R.; Vreeland, R. H.; Litchfield, C. D.; Mormile, M. R.; Tindall, B. J.; Oren, A.; Bejar, V.; Quesada, E.; Ventosa, A. (2007). "Recommended minimal standards for describing new taxa of the family Halomonadaceae". International Journal of Systematic and Evolutionary Microbiology. 57 (Pt 10): 2436–2446. doi:10.1099/ijs.0.65430-0. PMID 17911321.
  21. Arahal, DR; Vreeland, RH; Litchfield, CD; et al. (2008). "Errata. Recommended minimal standards for describing new taxa of the family Halomonadaceae (vol 57, pg 2436, 2007)". Int. J. Syst. Evol. Microbiol. 58 (2673): 2008. doi:10.1099/00207713-58-11-2673.
  22. Bortman, Henry (2010-12-02). "Arsenic-Eating Bacteria Opens New Possibilities for Alien Life". Space.com. Retrieved 2010-12-02.
  23. Bortman, Henry (5 October 2009). "Searching for Alien Life, on Earth". Astrobiology Magazine (NASA). Retrieved 2010-12-02.
  24. Katsnelson, Alla (2 December 2010). "Arsenic-eating microbe may redefine chemistry of life". Nature. doi:10.1038/news.2010.645. Retrieved 2010-12-02.

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