Orthologous_MAtrix

Orthologous MAtrix

Orthologous MAtrix

Add article description

OMA (Orthologous MAtrix) is a database of orthologs extracted from available complete genomes.[1][2] The orthology predictions of OMA are available in several forms:

  • OMA Pairs: for a given gene, a list of predicted orthologs in other species is provided.
  • OMA Groups: a set of genes across different species which are all orthologous.
  • OMA Hierarchical Groups: the set of all genes that have evolved from a single ancestral gene in a given taxonomic range.
  • OMA Genome Pair view: the list of all predicted orthologs between two species.
Quick Facts Content, Description ...

See also

References

  1. [1]
    Altenhoff, Adrian M; Schneider Adrian; Gonnet Gaston H; Dessimoz Christophe (Jan 2011). "OMA 2011: orthology inference among 1000 complete genomes". Nucleic Acids Res. 39 (Database issue). England: D289-94. doi:10.1093/nar/gkq1238. PMC 3013747. PMID 21113020.
  2. [2]
    Altenhoff, Adrian M; Glover, Natasha M; Train, Clément-Marie; Kaleb, Klara; Warwick Vesztrocy, Alex; Dylus, David; de Farias, Tarcisio M; Zile, Karina; Stevenson, Charles; Long, Jiao; Redestig, Henning; Gonnet, Gaston H; Dessimoz, Christophe (2018). "The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces". Nucleic Acids Research. 46 (D1): D477–D485. doi:10.1093/nar/gkx1019. ISSN 0305-1048. PMC 5753216. PMID 29106550.


Stub icon

This Biological database-related article is a stub. You can help Wikipedia by expanding it.
Share this article:

This article uses material from the Wikipedia article Orthologous_MAtrix, and is written by contributors. Text is available under a CC BY-SA 4.0 International License; additional terms may apply. Images, videos and audio are available under their respective licenses.